PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.160860.2
Common NameCsa_2G372710, LOC101221329
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 365aa    MW: 41128.3 Da    PI: 4.4004
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.160860.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.3e-12199242654
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                      ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  A+eY+k+L
  Cucsa.160860.2 199 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTAILADAIEYMKEL 242
                     589*********************66......****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.154193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-15197261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-9199242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.3E-11199248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-16200265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.47E-4200246No hitNo description
CDDcd048730.00167288353No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MGAEPPLESE RKLEREMELD EHVFLEELMA LRRDPNWEAI PNEITDLCSN AWPFDYCFDQ  60
NTLSFPPNSS SQPLSTHNLH EFYNPLPNEF SVPQIPDSAF TAMEVAAAAA VAAAPLTFQP  120
EHPNVEREEE EEEEEEQLGF LADEIQNMEA VQVESICKME PNQSPEELQV FNIGTCSSSS  180
SLERKNRAKK LQGQPSKNLM AERRRRKRLN DRLSMLRSIV PKISKMDRTA ILADAIEYMK  240
ELLEKIGNLQ NEVEGSNSRM NSLKNTKPSE FVVRNTPKFE VESRDGETRI EICCGGKPGL  300
VLSTVNTIEA LGLEIQQCVI SCFNDFALQA TCSSQEMKQR TREVEAEELK EALFRNAGYG  360
GSCL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201208ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818231e-154LN681823.1 Cucumis melo genomic scaffold, anchoredscaffold00014.
GenBankLN7132571e-154LN713257.1 Cucumis melo genomic chromosome, chr_3.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004148407.10.0PREDICTED: transcription factor bHLH61-like
SwissprotQ9LSL14e-76BH093_ARATH; Transcription factor bHLH93
TrEMBLA0A0A0LLF30.0A0A0A0LLF3_CUCSA; DNA binding protein
STRINGVIT_18s0001g08040.t011e-116(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.11e-76beta HLH protein 93
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]